PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G031600.1
Common NamePOPTR_0017s06000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 255aa    MW: 30214.3 Da    PI: 6.044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G031600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.31.6e-2821311128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         +p GfrF+Ptdeel+ ++L +k++g++++l ++i e+++y+ eP+dL+ + ++  ++ e y++++r+ +y+     + +  +g Wkat + 
  Potri.017G031600.1   2 VPHGFRFNPTDEELI-QFLDRKASGQEMPL-HFILETNVYEREPQDLEwNqTTPLSNGERYYYCTREINYS-----REVLGRGWWKATSHV 85 
                         589************.9*************.89**************9542333366699******99985.....347889********* PP

                 NAM  90 kevlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                         k+++++  ++ lvg k+ L+f+     + ++++++kt+W+m ey+l
  Potri.017G031600.1  86 KKIHANndDQLLVGNKRPLTFHrfkdnERNRNNAVKTNWIMYEYSL 131
                         ****98544555**********7776556778889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-312146IPR003441NAC domain
PROSITE profilePS5100532.1822146IPR003441NAC domain
PfamPF023651.7E-163131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVPHGFRFNP TDEELIQFLD RKASGQEMPL HFILETNVYE REPQDLEWNQ TTPLSNGERY  60
YYCTREINYS REVLGRGWWK ATSHVKKIHA NNDDQLLVGN KRPLTFHRFK DNERNRNNAV  120
KTNWIMYEYS LESRTTLWKL CKIKHKGKPS VQEEMESMRE QYSSRNDFEA GSSTNFVGGQ  180
QQQEQTILPT NYEGYDQHQS YYQWNNMQQL PPSPYDPYLP APPSTSSGHY YVEQQEKLEP  240
SDEHPFPSLW SWTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-16214620168NAC domain-containing protein 19
3swm_B1e-16214620168NAC domain-containing protein 19
3swm_C1e-16214620168NAC domain-containing protein 19
3swm_D1e-16214620168NAC domain-containing protein 19
3swp_A1e-16214620168NAC domain-containing protein 19
3swp_B1e-16214620168NAC domain-containing protein 19
3swp_C1e-16214620168NAC domain-containing protein 19
3swp_D1e-16214620168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G031600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146281e-165AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372888.10.0NAC domain-containing protein 83
TrEMBLB9MY190.0B9MY19_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15526612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-22NAC domain containing protein 41