PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G042200.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 397aa    MW: 44916.1 Da    PI: 5.0073
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G042200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.32.1e-13249277735
                GATA   7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         ++Tp +Rrgp g++tLCnaCGl+++ kg+
  Potri.017G042200.4 249 KDTPAMRRGPAGPRTLCNACGLMWANKGT 277
                         57************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.055114149IPR010399Tify domain
SMARTSM009791.1E-4114149IPR010399Tify domain
PfamPF062008.1E-8118148IPR010399Tify domain
PROSITE profilePS5101713.314182224IPR010402CCT domain
PfamPF062033.1E-16182224IPR010402CCT domain
SMARTSM004011.6E-5241288IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-8249291No hitNo description
Gene3DG3DSA:3.30.50.103.3E-12249282IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.4E-11249277IPR000679Zinc finger, GATA-type
CDDcd002021.47E-11251284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
KTIKIKVYYF IARNFTYRER EGGWEGGGAL FLVGMIKKME LVNHQRQKKG RKGRDHHNRG  60
VMQIEGVDYD YGYGFDDGMM EMINGGVVEE VRQINTNSNY SGVVIGNRND RVVETTRTSE  120
LTIAFEGEVY VFPAVTPSKV QAVLFLLGEP ETSTIAPNSD FFLQQNARSA GDASQGLKFS  180
RRIASLERFR EKRKERCFEK KVRYTCRKEV AQRMHRKKGQ FASSNDCYST DTGNWEPSNS  240
MPNPESLAKD TPAMRRGPAG PRTLCNACGL MWANKGTLRD LSKGGRHISF NQNEPVTPDF  300
KPLNMELENP FANPEEEESQ EESKPVPLES ENSIRPNEQD MLETDKNVPD PLPMHVENSS  360
VNLDDEDFEN TLDELGDVSG SEFEIPEHFD DQVVVF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G042200.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166010.0AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445181.10.0GATA transcription factor 19 isoform X1
SwissprotQ8GXL71e-51GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N7G4330.0A0A3N7G433_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-46ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]