PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G042200.5
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 301aa    MW: 34031.9 Da    PI: 9.8788
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G042200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14251284132
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                         C++Cg +   Tp +Rrgp g++tLCnaCGl+++ 
  Potri.017G042200.5 251 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWAN 284
                         *****88778**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.055114149IPR010399Tify domain
SMARTSM009791.1E-4114149IPR010399Tify domain
PfamPF062005.6E-8118148IPR010399Tify domain
PfamPF062032.1E-16182224IPR010402CCT domain
PROSITE profilePS5101713.314182224IPR010402CCT domain
SMARTSM004015.6E-6245299IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.7E-9247285No hitNo description
Gene3DG3DSA:3.30.50.101.8E-12250285IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.76E-11250285No hitNo description
PROSITE patternPS003440251278IPR000679Zinc finger, GATA-type
PfamPF003202.3E-12251285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
KTIKIKVYYF IARNFTYRER EGGWEGGGAL FLVGMIKKME LVNHQRQKKG RKGRDHHNRG  60
VMQIEGVDYD YGYGFDDGMM EMINGGVVEE VRQINTNSNY SGVVIGNRND RVVETTRTSE  120
LTIAFEGEVY VFPAVTPSKV QAVLFLLGEP ETSTIAPNSD FFLQQNARSA GDASQGLKFS  180
RRIASLERFR EKRKERCFEK KVRYTCRKEV AQRMHRKKGQ FASSNDCYST DTGNWEPSNS  240
MPNPESLLLR CQHCGISAKD TPAMRRGPAG PRTLCNACGL MWANKVGIKV LVNLLIWLYS  300
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G042200.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166010.0AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445181.10.0GATA transcription factor 19 isoform X1
RefseqXP_024445182.10.0GATA transcription factor 24 isoform X2
SwissprotQ5Z4U54e-51GAT20_ORYSJ; GATA transcription factor 20
SwissprotQ8GXL72e-51GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N7G4330.0A0A3N7G433_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-46ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]