PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G042300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 116aa    MW: 12867.2 Da    PI: 10.5952
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G042300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA421.3e-136195133
                GATA  1 CsnC..gttkTplWRrgpdgnktLCnaCGlyyrkk 33
                        C++C  g+++Tp+++rgp g++tLCnaCGl+++ k
  Potri.017G042300.1 61 CTHCriGSKSTPMMHRGPAGPRTLCNACGLKWANK 95
                        9***555677**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-655111IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-85997No hitNo description
Gene3DG3DSA:3.30.50.101.5E-96095IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.03E-106095No hitNo description
PROSITE patternPS0034406188IPR000679Zinc finger, GATA-type
PfamPF003201.7E-116195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
ASGCSATQGS GQDDSMLETL RVLIHFFNLQ HKHPFFNSVI PKKRVKILYK KNLFPDALCR  60
CTHCRIGSKS TPMMHRGPAG PRTLCNACGL KWANKAWKFL GVPVIKFVNL LQVEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G042300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166010.0AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3N7HSY02e-68A0A3N7HSY0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06980.13e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-17ZIM-LIKE 2