PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G059600.1
Common NamePOPTR_0017s08630g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 486aa    MW: 54386.4 Da    PI: 5.8404
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G059600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34181082101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+
  Potri.017G059600.1  18 FLIKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFLKDQKH 99 
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Potri.017G059600.1 100 LLKNIHRRK 108
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3514107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3714107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5914107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEAGSSPSAA AGGGPAPFLI KTYDMVDDSS TDEIVSWSSN KNSFVVWNPP EFARLLLPTF  60
FKHNNFSSFI RQLNTYGFRK IDPEKWEFAN EDFLKDQKHL LKNIHRRKPI HSHSNPQGSL  120
VDQERAAYEE EIDKLSRHKA KLEASILGFS QQRSSAKLHV EDLTQRIDTM QQRQEKLLSF  180
LEKAVQNPAF VEHLACKIES MDFSAYSKKR RLPQVDHSMP TAENSFVENH CSSRPESNVI  240
YQDFSNKLRL ELSPAVSDIN LISRSTQSSN EDGGSPQRKI SEGNPKDGPT RTSGLLLAPE  300
TLELSDTGTS YTFKVNPAVP RDLPASGSQA QHSLQANLTS NEEVDGLISC QLNLTLASSA  360
LQVNKNPYLA RMPPLRQEIV KSPESRFNES NKDSDMRVIQ NMNLGNEGTT LSSSQEIPNN  420
SQVPASAPAR VNDGFWEQFL TERPGSYENE EASSNYRANS YDEQDERRLG FGVPRNAKNM  480
EQLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-22110712129Heat shock factor protein 1
5d5v_B5e-22110712129Heat shock factor protein 1
5d5v_D5e-22110712129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.35900.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G059600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139830.0KP013983.1 Populus simonii heat shock transcription factor A5a (HsfA5a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373092.20.0heat stress transcription factor A-5
SwissprotQ94BZ51e-173HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A2K1X3W70.0A0A2K1X3W7_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Representative plantOGRP97161012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-176HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]