PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G062500.1
Common NamePOPTR_0017s08950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 145aa    MW: 16492.4 Da    PI: 10.362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G062500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00064466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C  C+++F ++  L  H++ H
  Potri.017G062500.1 44 FPCLFCPRRFYTSQALGGHQNAH 66
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.22E-64271No hitNo description
PROSITE profilePS5015710.4084471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MADPSLMHNF LNHQHQQYPS SSTSTPTKKS STNLPQYPSS YRHFPCLFCP RRFYTSQALG  60
GHQNAHRRER AAQRRNNKTL NTPISTDPSL RIPSSFVNHN HPATTSPPAV PFLNQYHQLQ  120
ALDPMMNRNY QFPLPSSGVY VSHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G062500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164520.0AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373125.21e-101zinc finger protein KNUCKLES
TrEMBLA0A2K1X4131e-100A0A2K1X413_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08950.12e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15014811
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.13e-18C2H2 family protein