PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G063300.1
Common NamePOPTR_0017s09030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 248aa    MW: 27741.5 Da    PI: 10.0009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G063300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.32.1e-34141401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgk 88 
                         lp G+rFhPtdeelvv+yLk+kv g ++++ +vi+e+d+++ +P++Lp ++   +++ yfFs+++ +   g++ +r++    sgyWk  gk
  Potri.017G063300.1  14 LPIGYRFHPTDEELVVHYLKRKVLGLPMPA-SVIPEFDVFQNDPSSLPGNL---KEKRYFFSQKKWND-FGTKCKRTAGsgpSGYWKPIGK 99 
                         699***************************.99***************544...45789**9987654.57888886555669******** PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k+++++ ++++vg++ktLvf + +++  ++++Wvmh y l
  Potri.017G063300.1 100 GKQIVASdSNKAVGTRKTLVFKERKHSIKTRSQWVMHGYCL 140
                         ***999867778**********9999999**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3811166IPR003441NAC domain
PROSITE profilePS5100539.92414166IPR003441NAC domain
PfamPF023655.0E-2215139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MERPNFVENG GFKLPIGYRF HPTDEELVVH YLKRKVLGLP MPASVIPEFD VFQNDPSSLP  60
GNLKEKRYFF SQKKWNDFGT KCKRTAGSGP SGYWKPIGKG KQIVASDSNK AVGTRKTLVF  120
KERKHSIKTR SQWVMHGYCL AGSATGPKTT QMEEVGDWVA YSVFQRKRKP RKNVVISNPS  180
NINETRNVEI ISPSFMDFMM EQSSDGVGPP SPCSSGVTEV SSNEVDQEEI SSSSISLFSY  240
PCNRKRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-221417220174NAC domain-containing protein 19
3swm_B4e-221417220174NAC domain-containing protein 19
3swm_C4e-221417220174NAC domain-containing protein 19
3swm_D4e-221417220174NAC domain-containing protein 19
3swp_A4e-221417220174NAC domain-containing protein 19
3swp_B4e-221417220174NAC domain-containing protein 19
3swp_C4e-221417220174NAC domain-containing protein 19
3swp_D4e-221417220174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171QRKRKPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G063300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699960.0KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373134.10.0NAC domain-containing protein 83
TrEMBLB9N0W90.0B9N0W9_POPTR; Uncharacterized protein
STRINGPOPTR_0017s09030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1179656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-46NAC domain containing protein 83