PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G071500.1
Common NamePOPTR_0017s10780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 191aa    MW: 21694.2 Da    PI: 6.7963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G071500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l + ++ +G g W++ a+  g++Rt+k+c++rw++yl
  Potri.017G071500.1 15 KGPWTLEEDLILTNHIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62
                        79********************************************97 PP
2Myb_DNA-binding55.81e-1768111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Potri.017G071500.1  68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22765IPR009057Homeodomain-like
PROSITE profilePS5129414.5331062IPR017930Myb domain
SuperFamilySSF466894.12E-3012109IPR009057Homeodomain-like
SMARTSM007178.1E-131464IPR001005SANT/Myb domain
PfamPF002495.5E-151562IPR001005SANT/Myb domain
CDDcd001671.56E-91762No hitNo description
PROSITE profilePS5129426.02763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2566117IPR009057Homeodomain-like
SMARTSM007171.8E-1567115IPR001005SANT/Myb domain
PfamPF002491.4E-1668111IPR001005SANT/Myb domain
CDDcd001677.36E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDKTPSNSQD VEVRKGPWTL EEDLILTNHI ANHGEGVWNS LAKAAGLKRT GKSCRLRWLN  60
YLRPDLRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHIKQA  120
ETFAAQSSET NEHGSSSSQV SSTTELMVSN CLPSYQGDVE AFSGGNIPQE LNENYWSMED  180
LWSMQLLNGD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G071500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4970530.0FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323803.11e-140myb-related protein 305 isoform X1
SwissprotP813912e-90MYB05_ANTMA; Myb-related protein 305
TrEMBLB9IJM01e-139B9IJM0_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_186.71e-106(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-79myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]