PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G079500.1
Common NamePOPTR_0017s11570g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 539aa    MW: 58360.2 Da    PI: 6.6957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G079500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.5e-30207266159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  Potri.017G079500.1 207 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApLCPVRKQVQRCAEDTSILITTYEGTHNHP 266
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31192268IPR003657WRKY domain
SuperFamilySSF1182908.76E-27199268IPR003657WRKY domain
PROSITE profilePS5081128.07202268IPR003657WRKY domain
SMARTSM007744.5E-36207267IPR003657WRKY domain
PfamPF031064.2E-26208266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSSSGGAAIE ERAVQFGLTS REDSGSSQEA KKEEVIESAK SEMGDVREEN HRLKMMLERI  60
EKDYQSLQLR FFDILQHETS SKQSTDSAPS HDETEESNEL VSLCLGRSPS EPKKEEKSTN  120
SAKSRENEEL KANLSLGLDS KILTSTETAS NPSPAESVEE PKEEAGETWP PSKIIPKRNG  180
DHDEAAQQSQ AKRARVCVRT RCETPTMNDG CQWRKYGQKI SKGNPCPRAY YRCTVAPLCP  240
VRKQVQRCAE DTSILITTYE GTHNHPLPVS ATAMASTTSA AASMLLSGSS TSQQGLGSHI  300
NATSARTELN GVSFSLHDHL RAKQIYFPNS SSPTFPTITL DLTTSPSTST TPFGRFSSSF  360
SSTSRYPSTS LNFSSTEPNS LPPIWGNGLH NYGTRSYNHQ QLYQSFMEKN HQAAASQQVL  420
TDTLTKAITS DPSFRTVIAT AISSMIGGGG SAIANNRNQR AGDQNCFGQN LNFGETMTTS  480
AFSINSLSQN GKGCASSCFN GLSSSTSQKG SSQLQPALPF SVFNSASMPN NDNEEHKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21194268174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G079500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323839.30.0probable WRKY transcription factor 72
SwissprotQ9LXG81e-111WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A2K1X4U10.0A0A2K1X4U1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11570.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-90WRKY DNA-binding protein 72