PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G081300.1
Common NamePOPTR_0017s11760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 91aa    MW: 10287.8 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G081300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.1e-0818571554
                        HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +i +  ++Lr+llP+ s+ +s K+s + +L+++++YI++L
  Potri.017G081300.1 18 QIIDLVSKLRQLLPEISQRRSDKVSASKVLQETCNYIRNL 57
                        5667779********559********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.493357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-91777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-61857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-81873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRPRQSS VPRITDDQII DLVSKLRQLL PEISQRRSDK VSASKVLQET CNYIRNLHRE  60
VDDLSERLSQ LLATIDADSP EAAIIRSLIM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.97301e-154leaf
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G081300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474931e-110EF147493.1 Populus trichocarpa clone WS01231_N01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323848.21e-56transcription factor PRE1
SwissprotQ9LJX14e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLB9IJW03e-55B9IJW0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11760.15e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.18e-41bHLH family protein