PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G082700.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 162aa MW: 17358.3 Da PI: 6.2459

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G082700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.2	3.4e-32	92	148	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +v+Y eC+kNhAa +Gg+avDGC+Efm+s geegtaaal+CaACgCHRnFHRreve+e Potri.017G082700.1 92 NVKYGECQKNHAAGVGGYAVDGCREFMAS-GEEGTAAALTCAACGCHRNFHRREVETE 148 799***********************9.999*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-20	88	158	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.1E-30	92	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.6E-27	94	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.294	95	144	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEGLYISGLG LAVTTKSNFL LLSLLPLSIF TPYSNYRSVF QLENSSLAYQ GFEGEGSGEE 60 LGTSQMRKRQ VVVRRSEEPS RSSTTSSFTI RNVKYGECQK NHAAGVGGYA VDGCREFMAS 120 GEEGTAAALT CAACGCHRNF HRREVETEVA CDCSSPSSNG N*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.13312	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269\|PubMed:16412086}.

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G082700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306048.1	8e-76	mini zinc finger protein 2
Swissprot	Q9LJW5	1e-44	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	B9H0F7	2e-74	B9H0F7_POPTR; ZF-HD family protein
STRING	POPTR_0004s12510.1	3e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	4e-29	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Potri.017G082700.1

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]