PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G085200.1
Common NamePOPTR_0017s12140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 438aa    MW: 48800.8 Da    PI: 8.3452
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G085200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16130175147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Potri.017G085200.1 130 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLR-GRSGKSCRLRWFNQ 175
                         899*****************************.***********996 PP
2Myb_DNA-binding48.61.9e-15182224145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r ++ ++E+e+l  a++ +G++ W++Iar ++ gRt++ +k++w+
  Potri.017G085200.1 182 RTAFNEDEEERLMAAHRVYGNK-WALIARFFP-GRTDNAVKNHWH 224
                         66899*****************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.55125176IPR017930Myb domain
SMARTSM007179.3E-15129178IPR001005SANT/Myb domain
PfamPF002496.9E-16130175IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-27130226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-25131183IPR009057Homeodomain-like
CDDcd001673.03E-13133174No hitNo description
PROSITE profilePS5129425.351177231IPR017930Myb domain
SMARTSM007173.5E-13181229IPR001005SANT/Myb domain
PfamPF002491.5E-12182224IPR001005SANT/Myb domain
CDDcd001671.94E-10184224No hitNo description
Gene3DG3DSA:1.10.10.605.9E-19184230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEMTLQHSHN ITCCHLENDG IPSHYTTSTA TSCNSSAMET LNNMGSLSVD PSHRMPLNIC  60
SSVCFDMGQR GFALEGKSCS NRLENNQCSE EVGDGGKEQK HKAARIENIE ESLVNGKDIM  120
EGREPKICNR GHWRPAEDSK LKELVALYGP QNWNLIAEKL RGRSGKSCRL RWFNQLDPKI  180
NRTAFNEDEE ERLMAAHRVY GNKWALIARF FPGRTDNAVK NHWHIVMARK YREQSCIYRR  240
RKRTQAVQRR VDNAGDYVSR NTVKNTDPNS NIICNSRIIK PSCLPFSPLI GGCNSTYGKM  300
TAELLFSRSH HGSLAEETSR FLSAGHQMHY NMLRDSDTCT VFYAMQQSSN RHFPGFSDAM  360
ASSATQATVS EPSSSSLSVA ENTEASSFEI TTTSPPFIDF LGVGATGSAR VSKTCNMYLR  420
SNCVAYGSTG IIEGKEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-321302307107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G085200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444210.10.0transcription factor MYB54 isoform X1
TrEMBLA0A2K1X5490.0A0A2K1X549_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2807933
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-67myb domain protein 105