PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G104800.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 238aa MW: 26248.9 Da PI: 7.9527

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G104800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.2e-30	91	149	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++W+KYGqK++kgs++pr+YYrC+s+ gC +kk+vers++dp++++itY++eHnh+ Potri.017G104800.1 91 SDLWAWKKYGQKHIKGSPYPRGYYRCSSTkGCLAKKHVERSRNDPNMLVITYNSEHNHP 149 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-30	84	151	IPR003657	WRKY domain
PROSITE profile	PS50811	31.743	85	151	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-26	88	151	IPR003657	WRKY domain
SMART	SM00774	7.0E-36	90	150	IPR003657	WRKY domain
Pfam	PF03106	5.3E-25	92	149	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MRSDTVFPVS CDVEQSKIND QTESYTIVFD KIGKNLRENE EKVQRWMDIL SEVEISSGSR 60 SAERKSQAKK VVCIPAPAAA NSRSSGEVVP SDLWAWKKYG QKHIKGSPYP RGYYRCSSTK 120 GCLAKKHVER SRNDPNMLVI TYNSEHNHPW PTQRNALAGS TRSQPTKSNA ASKSSTGAQA 180 RKTANTKEDQ KESSNDTLSP TDIIGGSSTA SASVKEESDD IEKQMEMDDN EFSEGFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-25	66	152	3	80	Disease resistance protein RRS1
5w3x_D	5e-25	66	152	3	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G104800.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ569571	0.0	KJ569571.1 Populus trichocarpa WRKY66 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011972.1	1e-150	PREDICTED: WRKY transcription factor 6-like isoform X3
Swissprot	O64747	8e-64	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A060AFA1	1e-176	A0A060AFA1_POPTR; WRKY66
STRING	POPTR_0011s16050.1	1e-114	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5430	34	54
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	3e-66	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Potri.017G104800.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]