PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G104900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 182aa    MW: 20819.1 Da    PI: 8.203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G104900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.11.9e-113575546
                 NAM  5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwd 46
                        +rF Ptd elv +yLk+k+ +k +el ++i++vd+yk++P++
  Potri.017G104900.1 35 IRFAPTDVELVLYYLKRKICEKGFEL-DIIRDVDVYKWDPES 75
                        79************************.99***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-123590IPR003441NAC domain
PfamPF023657.9E-53579IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MWAFLKLKKY IDIHAFIALM GNKMEEEDKS LAIEIRFAPT DVELVLYYLK RKICEKGFEL  60
DIIRDVDVYK WDPESYLSYP HWRATGNGTS SVQGIGDITL EQGQIGQPDR GGGKLQGEIA  120
VVHQEESELI GRCRSILCVK KNSGDGQMCR SFMPFTSFAK KVKWISWKLI SVHSLISPRR  180
CD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.119878e-43bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G104900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5132246e-40DQ513224.1 Populus trichocarpa clone 528929 TIR-NBS-LRR-TIR type disease resistance protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444511.16e-53NAC domain-containing protein 17
TrEMBLA0A2K1X6291e-132A0A2K1X629_POPTR; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.18e-12NAC domain containing protein 17