PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G106700.1
Common NamePOPTR_0017s14490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 136aa    MW: 15657.4 Da    PI: 5.6043
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G106700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.34.6e-152170554
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                        +++rr+ +NRe+ArrsR RK++ ++eL   v  + +eN++L ++l++ ++
  Potri.017G106700.1 21 RKQRRMVSNRESARRSRMRKQKHLDELWSQVVWFRNENHQLLDKLNHVSE 70
                        689*****************************************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-121781IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.9791970IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-132170No hitNo description
Gene3DG3DSA:1.20.5.1707.3E-122193No hitNo description
PfamPF001707.3E-132170IPR004827Basic-leucine zipper domain
CDDcd147021.78E-162273No hitNo description
PROSITE patternPS0003602439IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSSISTSDEA DEQQLSLINE RKQRRMVSNR ESARRSRMRK QKHLDELWSQ VVWFRNENHQ  60
LLDKLNHVSE CHDRVVHENA QLKEETSGLR QILTDMQLNS PYPLLKDLED ITCDTAYLGS  120
ESSNQSITSS SDLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13340RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G106700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101391e-134AC210139.1 Populus trichocarpa clone POP113-I04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373522.15e-95basic leucine zipper 43
SwissprotQ9FMC24e-41BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2K1X6662e-93A0A2K1X666_POPTR; Uncharacterized protein
STRINGPOPTR_0017s14490.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-51basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]