PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G114500.1
Common NamePOPTR_0005s15670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 297aa    MW: 32048.5 Da    PI: 8.1672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G114500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.2e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p++      ++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  Potri.017G114500.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksSESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWQ 94 
                         6*********************9999777899*********************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l ++
  Potri.017G114500.1  95 LCQAAVEAVLKGA 107
                         *******998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381555.8E-941296IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0683109IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS SESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWQLCQAAV EAVLKGAPIT PINSEAAVNG  120
HGPPLKVYDI RHVSKEENSA ASNDANRART RCRVRRVVKP KASKRACFGN GLASIAVDTL  180
SARDELTRCT SHESSVSHQS ELAVLDGDSK ESDESMVSVE TAEASLLFPP NPESKNDCKA  240
HDVASNGISG LELGLDLTLG LEPVSRAHHV VPVKKRRVEA YGSGDVDTCK MELRLE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.89360.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G114500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442340.0EF144234.1 Populus trichocarpa clone PX0011_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383458.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-110LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA9P7Z50.0A9P7Z5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-100LOB domain-containing protein 41
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]