PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G115300.1
Common NamePOPTR_0005s15590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 266aa    MW: 30035.6 Da    PI: 6.6804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G115300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09158205455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+++Er RR++iN+++  L++l+P +    ++ +  a +Le+ ++Y++sLq
  Potri.017G115300.1 158 SHSIAERVRREKINNKLRCLQDLVPGC----HRSMGMAVMLEEIINYVHSLQ 205
                         8*************************9....899****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.01E-10152209No hitNo description
SuperFamilySSF474591.1E-16152219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.231154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17154218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-7158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAEFAEYQQR FRPSQPLTEM MDMNMEMLKH LPEMNPSILE SFSITDFSAD SLLARQQPEF  60
TATYDHNNLS STFHPDILST ATVVHTVTLN QNDSHDSKKR KSMEQSTSSY ISPTASTNET  120
KKKNNLGGSK KGENKEKEGD KAEEVIHVRA KRGQATDSHS IAERVRREKI NNKLRCLQDL  180
VPGCHRSMGM AVMLEEIINY VHSLQNQVEF LSMELAAASS SNDLNNLTES SKRAQGTDST  240
EAQKTQKWLR ERYGEITCFH SAWSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G115300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383447.10.0transcription factor bHLH75
TrEMBLU5GG630.0U5GG63_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.13e-46bHLH family protein