PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G116300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 240aa    MW: 26505.2 Da    PI: 10.0725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G116300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002785107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C + F ++  L  H++ H
  Potri.017G116300.1  85 YECQYCYREFANSQALGGHQNAH 107
                         99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.3E-682112No hitNo description
Gene3DG3DSA:3.30.160.606.4E-483111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.67685112IPR007087Zinc finger, C2H2
PfamPF139121.2E-585109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRSPPSSLIV IIRTLFCRQA LSFSLMDSIG CLTKSSTITS NNTTLKLFGF NISENTPTVP  60
LDSSKSPSGS QEPESSFQSS KGRKYECQYC YREFANSQAL GGHQNAHKKE RQLLKRAQMQ  120
ATRRLALASY VTIPNSMFST FIPSPPHLLD PAVVPVEAAR QQHAHSPPWF YKSYLGRMSR  180
DGRYLNGPPS IPGRCLDGKS NLVCSEAGLR ARAFPVSGFA REDVEPHHRH KGLGLDLHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G116300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444611.11e-179zinc finger protein 6
TrEMBLA0A2K1X6P11e-177A0A2K1X6P1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15460.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31981316
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.16e-13C2H2 family protein