PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G119900.1
Common NamePOPTR_0005s15100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 339aa    MW: 37254.8 Da    PI: 8.3921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G119900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.5e-13263288126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++tGtC+y ++C+FaHg
  Potri.017G119900.1 263 WKTELCNKWQETGTCPYDNNCQFAHG 288
                         8************************8 PP
2zf-CCCH22.91.5e-07301326126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  Cr  +++G C+yG rC+F H+
  Potri.017G119900.1 301 YKTQACRMVLAGGVCPYGHRCHFRHS 326
                         9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.7E-18259295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-11259294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314262290IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7262289IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9296330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-12296329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272300328IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5300327IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5301326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEITQPPPSG SKPATQTAAQ SPPFDYHQAN DQDQFASNFT SLYLSIFPPK PLLLPNSLSF  60
TPSTTASPTS SSAADEIATE NRLRQARLIL EYQDLCDHYN VSLSRLQTLT NELELIRQEN  120
ADLRVANSEL LKLINLSSQA AAMQHQGRAF GISRDVAIER RNSVNNVERE RVTLPKSISV  180
RSSGYVKVNQ AVSGNVSTKG GGRDGASSNS SRSRVASQLD QLVSGSCMQM QQRVYVPGGG  240
GGKRSEEEIA AGMELEVFNQ GMWKTELCNK WQETGTCPYD NNCQFAHGIG ELRPVIRHPR  300
YKTQACRMVL AGGVCPYGHR CHFRHSLTDQ DRLLLGPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22263326467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G119900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090420.0AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383398.20.0zinc finger CCCH domain-containing protein 14 isoform X1
TrEMBLA0A2I4KL090.0A0A2I4KL09_POPTR; C3H family protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-71C3H family protein