PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G120000.1
Common NamePOPTR_0005s15090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 234aa    MW: 26828.7 Da    PI: 4.8783
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G120000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC127.54.8e-40641672101
               NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         l  fw++q   i ++t  k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlrswl++ ++krrtl+++di+ ++ + d+
  Potri.017G120000.1  64 LDEFWNQQlleIYNTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRSWLQTASCKRRTLQRCDISRVIRQEDM 154
                         779*****877445555555999******************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                          +fl  +vp d++
  Potri.017G120000.1 155 LNFLNRVVPCDHK 167
                         ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-2458158IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-2987163IPR009072Histone-fold
PfamPF008083.7E-1587148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDLNQSIELD LASADPSPQE VENALPMNSS MLPYHQTTKE LVRVFSYANR SLFSYPLKQH  60
KQNLDEFWNQ QLLEIYNTTA SKSNNMLPLA RIKRVMKSDG DVKMISAETP ILFSKACELF  120
ILELTLRSWL QTASCKRRTL QRCDISRVIR QEDMLNFLNR VVPCDHKKED EVTKCTEEME  180
SLPNMQMPAF PFLDLNGEVM MDENSHEDPQ ELMIKPPMPS SDFTSGSASK WAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-2971163394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G120000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090421e-106AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444106.11e-156nuclear transcription factor Y subunit C-2
TrEMBLA0A2K1X6V11e-154A0A2K1X6V1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15090.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-37nuclear factor Y, subunit C2