PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G120000.2

Common Name

POPTR_0005s15090g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 217aa MW: 24799.3 Da PI: 4.5948

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G120000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	127.7	4e-40	47	150	2	101
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l fw++q i ++t k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlrswl++ ++krrtl+++di+ ++ + d+ Potri.017G120000.2 47 LDEFWNQQlleIYNTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRSWLQTASCKRRTLQRCDISRVIRQEDM 137 779***877445555555999**************************************************************** PP NF-YC 89 fdflvdivprdel 101 +fl +vp d++ Potri.017G120000.2 138 LNFLNRVVPCDHK 150 ******99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.19E-25	13	141	IPR009072	Histone-fold
Pfam	PF00808	3.2E-15	70	131	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.3E-29	70	146	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDLNQSIELD LASADPSPQE VENALPMNSS MLPYHQTTKE LQHKQNLDEF WNQQLLEIYN 60 TTASKSNNML PLARIKRVMK SDGDVKMISA ETPILFSKAC ELFILELTLR SWLQTASCKR 120 RTLQRCDISR VIRQEDMLNF LNRVVPCDHK KEDEVTKCTE EMESLPNMQM PAFPFLDLNG 180 EVMMDENSHE DPQELMIKPP MPSSDFTSGS ASKWAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-29	54	146	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G120000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209042	1e-106	AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444106.1	1e-160	nuclear transcription factor Y subunit C-2
TrEMBL	A0A2K1X6V1	1e-159	A0A2K1X6V1_POPTR; Uncharacterized protein
STRING	POPTR_0005s15090.1	1e-110	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-37	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Potri.017G120000.2
Entrez Gene	18099441