PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G125200.2
Common NamePOPTR_0005s14540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 590aa    MW: 64148.1 Da    PI: 4.7059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G125200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.93.4e-1372085693374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         ++++++ ea+++++l+la+al++++  la++++ +m+++a+yf+eALa+r+++    ++ + ++ ++s    s++l +   f+e++P+lkf
  Potri.017G125200.2 208 QAIMAVSEAIQQENLKLADALVKHIGVLAASQAGAMRKVATYFAEALARRIYK----IFPQDHCLDSS---YSDTLEM--HFYETCPYLKF 289
                         67899***********************************************9....44333344443...5555555..5********** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         +h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va+
  Potri.017G125200.2 290 AHFTANQAILEAFANASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVEFEFRGFVAS 380
                         ******************************************************************************************* PP

                GRAS 185 rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         +l+dle e+L+++p   Ea+aVn+v++lhrlld+++ +++    vL  +k ++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsle 
  Potri.017G125200.2 381 SLADLEAEMLDLRPpeVEAVAVNSVFELHRLLDRPGGIDK----VLGSIKAMRPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEG 467
                         **************9999**************99999998....*********************************************88 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                         +  + ++++ ++++ +lgr+i+nvvacega+r+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW+
  Potri.017G125200.2 468 SGVTPTSQDLVMSELYLGRQICNVVACEGADRVERHETLAQWRTRFDSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWH 558
                         87788899999******************************************************************************** PP

                GRAS 364 drpLvsvSaWr 374
                         +rpL+++SaW+
  Potri.017G125200.2 559 TRPLIATSAWQ 569
                         **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.3E-3546111IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.5E-3746117No hitNo description
PROSITE profilePS5098566.469180548IPR005202Transcription factor GRAS
PfamPF035141.2E-134208569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MKRDHQETIG GAGNSIGNKA ESSSSSMATG KGKLWVEDDQ DAGGMDELLA VLGYKIKSSE  60
MADVAQKLEQ LEMVLGSEDG ISHLASDTVH YNPSDLSGWV QSMLSELNNL PSSDLDSSTL  120
LSNNQDSNPS TMTSLDFPNN SQSKAFVDDS EYDLRAIPGV AAYPQQEFDK SNDRKRMKLT  180
LVGSNTAPTL AVNSLQSSNS SCTPSSPQAI MAVSEAIQQE NLKLADALVK HIGVLAASQA  240
GAMRKVATYF AEALARRIYK IFPQDHCLDS SYSDTLEMHF YETCPYLKFA HFTANQAILE  300
AFANASRVHV IDFGLKQGMQ WPALMQALAL RPGGPPAFRL TGIGPPQPDN TDALQQVGWK  360
LAQLAQTIGV EFEFRGFVAS SLADLEAEML DLRPPEVEAV AVNSVFELHR LLDRPGGIDK  420
VLGSIKAMRP KIVTIVEQEA NHNGPVFLDR FTEALHYYSS LFDSLEGSGV TPTSQDLVMS  480
ELYLGRQICN VVACEGADRV ERHETLAQWR TRFDSAGFDP VHLGSNAFKQ ASMLLALFAG  540
GDGYRVEENN GCLMLGWHTR PLIATSAWQL AAGDSRLRVN SAEFELPSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6821356826378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.158190.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G125200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383329.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLU5GFQ30.0U5GFQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14540.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein