PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G125800.1
Common NamePOPTR_0005s14470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 272aa    MW: 30838 Da    PI: 8.3851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G125800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-16956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll ++v+++G g+W  I+   g++R++k+c+ rw++yl
  Potri.017G125800.1  9 KGAWTEEEDILLRKCVEKYGEGRWCQIPLQAGLNRCRKSCRMRWLNYL 56
                        79********************************************97 PP
2Myb_DNA-binding38.72.4e-1262110147
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                         rg ++  E +l+++++k+lG++    W++Ia +++ gRt++++k++w++ 
  Potri.017G125800.1  62 RGQFSVGEVDLIIRLHKLLGNRqvkMWSLIAGRLP-GRTANDVKNYWNTN 110
                         788999999**************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.954160IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-22659IPR009057Homeodomain-like
SuperFamilySSF466894.77E-276107IPR009057Homeodomain-like
SMARTSM007171.4E-15858IPR001005SANT/Myb domain
PfamPF002493.6E-15956IPR001005SANT/Myb domain
CDDcd001678.84E-121156No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1960115IPR009057Homeodomain-like
SMARTSM007173.6E-1061113IPR001005SANT/Myb domain
PROSITE profilePS5129416.46161115IPR017930Myb domain
PfamPF002493.6E-1162111IPR001005SANT/Myb domain
CDDcd001673.10E-865111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVSSLGVRKG AWTEEEDILL RKCVEKYGEG RWCQIPLQAG LNRCRKSCRM RWLNYLKPNV  60
NRGQFSVGEV DLIIRLHKLL GNRQVKMWSL IAGRLPGRTA NDVKNYWNTN LRKKVVSSTR  120
EAQTEPEPKA ITKDNIIKPR PRNFKNLCWL RAGKGTPFIN VGSQYGDDLC KPYSTIAFPP  180
SDTDEVERMW WESLLDDKEI NLTNRNSCQN SCLGSGSTAN QEPINSLFVE ANPPGGIMIG  240
DVFSDQGQNR WGDISFDADL WSLIDTEIDQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2191154105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-20911558159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-20911558159MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-21911527128MYB TRANSFORMING PROTEIN
1mse_C3e-2191154105C-Myb DNA-Binding Domain
1msf_C3e-2191154105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G125800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444002.10.0transcription factor MYB90
SwissprotQ9FNV97e-57MY113_ARATH; Transcription factor MYB113
TrEMBLU5GFP30.0U5GFP3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-59myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]