PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G125900.1
Common NamePOPTR_0005s14460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 262aa    MW: 29646.1 Da    PI: 8.6142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G125900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-16855148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll ++v+++G g+W  I+ + g++R++k+c+ rw++yl
  Potri.017G125900.1  8 KGAWTEEEDILLRKCVEKYGEGRWCQIPLKAGLNRCRKSCRMRWLNYL 55
                        79********************************************97 PP
2Myb_DNA-binding38.82.2e-1261109147
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                         rg ++  E +l+++++k+lG++    W++Ia +++ gRt++++k++w++ 
  Potri.017G125900.1  61 RGQFSVGEVDLIIRLHKLLGNRqvkMWSLIAGRLP-GRTANDVKNYWNTN 109
                         788999999**************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.867359IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-21658IPR009057Homeodomain-like
SMARTSM007179.4E-16757IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-267106IPR009057Homeodomain-like
PfamPF002493.0E-15855IPR001005SANT/Myb domain
CDDcd001676.62E-121055No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2059114IPR009057Homeodomain-like
SMARTSM007172.4E-1060112IPR001005SANT/Myb domain
PROSITE profilePS5129417.0860114IPR017930Myb domain
PfamPF002493.4E-1161110IPR001005SANT/Myb domain
CDDcd001674.30E-864110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVSSFVRKGA WTEEEDILLR KCVEKYGEGR WCQIPLKAGL NRCRKSCRMR WLNYLKPNVK  60
RGQFSVGEVD LIIRLHKLLG NRQVKMWSLI AGRLPGRTAN DVKNYWNTNL RKKVVSSTRE  120
AQTEPEPKAI TKANIIKPRP HKFKSLCWLG GKGIPFFNGG FQYGYDLCKP CSTSALSPSD  180
IIEVESMWGE SLLDDKEINI SNNKRCLGSG SEADREPINS LFVEDNAPEG ILIADVFCCE  240
QGQHCWSDLS FDADLWNLVN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2281144105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-21811458159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-21811458159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-22811427128MYB TRANSFORMING PROTEIN
1mse_C2e-2281144105C-Myb DNA-Binding Domain
1msf_C2e-2281144105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G125900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444020.10.0transcription factor MYB90
SwissprotQ9FNV94e-56MY113_ARATH; Transcription factor MYB113
TrEMBLB9H7E60.0B9H7E6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]