PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G126800.1
Common NamePOPTR_0005s14360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 331aa    MW: 36197.3 Da    PI: 6.519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G126800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09240283755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  Potri.017G126800.1 240 IAAKNRRERISERLKMLQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 283
                         5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-13234291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12235290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-11235287No hitNo description
SMARTSM003535.3E-12239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6241283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALAKDRMDS VQTCALYGNV MGDLSSLGPN YGFDEEGDRN FEKNSALMIK NLAMSPSPPS  60
LGSPSSANSG ELVFQATDNQ VEEAHSLINF KGTGFDSIMH ANGSLISFEQ SNRVSQTSSH  120
KDDYSAWEGN LSCNYQWNQI NPKCNANPRL MEDLNCYQSA SNFNSITNSA EKENHGDWLY  180
THESTIVTDS IPDSATPDAS SFHKRPNMGE SMQALKKQRD SATKKPKPKS AGPAKDPQSI  240
AAKNRRERIS ERLKMLQDLV PNGSKVDLVT MLEKAISYVK FLQLQVKVLA TDEFWPVQGG  300
KAPDISQVKG AIDATLSSQT KDRNSNSSSK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G126800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383310.20.0putative transcription factor bHLH086
TrEMBLA0A2K1X7630.0A0A2K1X763_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.19e-64RHD SIX-LIKE 1