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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.017G142400.1 |
| Common Name | POPTR_0017s01730g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 491aa MW: 54139.1 Da PI: 4.9297 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.017G142400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 355 | 1.1e-108 | 114 | 490 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+++++e+A a+ +g++ ++L+r+ + a+p+g++ qRl y++ AL++r+++ k+ +++e +e++ a++ ++++sP++k
Potri.017G142400.1 114 KQTIIEAASAIYEGKTDVYPEILSRICQVANPQGNSGQRLMEYMLMALKSRVNS----AEKTPSVRELY---NKEHVDATQSLYDLSPCFK 197
57899************************************************9....44444555554...88999999*********** PP
GRAS 93 fshltaNqaIleavege....erv.....HiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
+++++aN aI ea+ ++ + H++Dfdi+qG+Q+++Ll+aL+ ++ +p+ ++iT+v++ ++g +ke+l+ +ge L+++A++
Potri.017G142400.1 198 LGFMAANLAIIEATREQgremN-ScsngfHVVDFDIGQGGQYMNLLHALSgLQNLKPAIVKITAVAADSNGgeEKERLRLVGETLSQLAQR 287
**************99975541.045556*********************66667888*********999999****************** PP
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
l++++ fnv v+ rl++l+ e+L ++p+EalaVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e+++
Potri.017G142400.1 288 LRLSLCFNV-VSCRLSELSRESLGCEPEEALAVNFAFKLYRMPDESVSTENPRDELLRRVKGLGPRVVTIVEQEMNTNTAPFMARVNESCS 377
********9.799****************************************************************************** PP
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrv 351
yy alfds+++++ r+s+er+ vE+ lgr ivn vaceg++r+er+e ++kWr+r+++aGF+ p+s+ +a+++k+ l+ ++ + g++v
Potri.017G142400.1 378 YYGALFDSINSTMERDSSERARVEEG-LGRTIVNSVACEGRDRIERCEVFGKWRARMGMAGFELKPMSQIVAESMKARLSLTNrvNPGFTV 467
**************************.**************************************************99999887889*** PP
GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
+ee+g +++gWk+++L+++SaWr
Potri.017G142400.1 468 KEENGGVCFGWKGKTLTVASAWR 490
**********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MNLMSSNGVI NNNNNNMMPY VNMLQNQNGG GNGVVMGQDR EKKMLNQLQE LEKQLLDDDD 60
DNQEGDDVSV ITNTNSEWSE TIQNLMSSCN NPISPSPTSS SSSSSSTVTT PVSKQTIIEA 120
ASAIYEGKTD VYPEILSRIC QVANPQGNSG QRLMEYMLMA LKSRVNSAEK TPSVRELYNK 180
EHVDATQSLY DLSPCFKLGF MAANLAIIEA TREQGREMNS CSNGFHVVDF DIGQGGQYMN 240
LLHALSGLQN LKPAIVKITA VAADSNGGEE KERLRLVGET LSQLAQRLRL SLCFNVVSCR 300
LSELSRESLG CEPEEALAVN FAFKLYRMPD ESVSTENPRD ELLRRVKGLG PRVVTIVEQE 360
MNTNTAPFMA RVNESCSYYG ALFDSINSTM ERDSSERARV EEGLGRTIVN SVACEGRDRI 420
ERCEVFGKWR ARMGMAGFEL KPMSQIVAES MKARLSLTNR VNPGFTVKEE NGGVCFGWKG 480
KTLTVASAWR *
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
