PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G005300.3
Common NamePOPTR_0018s03770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 382aa    MW: 42325.7 Da    PI: 5.7628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G005300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081451148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed+ l d+ k +G g          ++R++k+c++rw +yl
  Potri.018G005300.3 14 KGAWTPLEDKMLMDYLKIHGEG----------LKRCGKSCRLRWMNYL 51
                        79******************99..........68************97 PP
2Myb_DNA-binding53.26.6e-1757100146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Potri.018G005300.3  57 RGNFSEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 100
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.861951IPR017930Myb domain
SuperFamilySSF466899.77E-241298IPR009057Homeodomain-like
SMARTSM007171.3E-41353IPR001005SANT/Myb domain
PfamPF002491.8E-61451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-141558IPR009057Homeodomain-like
PROSITE profilePS5129426.22752106IPR017930Myb domain
SMARTSM007176.8E-1656104IPR001005SANT/Myb domain
PfamPF002492.7E-1557100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2459105IPR009057Homeodomain-like
CDDcd001672.62E-1259102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGRKPGCSKD GLNKGAWTPL EDKMLMDYLK IHGEGLKRCG KSCRLRWMNY LRPNIKRGNF  60
SEDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWHT TIAKKAQHRQ LRGQPKVDRK  120
QIASGSQNGA ASNLKNQSTI ESQCTTGMVA ATTTLQENTA QDHQDSIAIP KSTNSDLQLD  180
MPKTYENEPS SKGSQNGAAS NFKNQSTIES QCTTGVVAAT PTLQENTAQD HQDSIAMAQS  240
TNSNLQYDIP KTNENESSSK GLASGEDDNS SNIMMYYDYM EDFSKILDSD FTKFSDVHDI  300
ISTDHHSNNT IEVNGDHHGV SINGCKSRET AEFPGKLVES DHWSSNKCIQ ADQGFDFMSL  360
LSFLDSTDDE WTADALGTKV L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231210625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G005300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371801.10.0myb-related protein 308
TrEMBLB9NA030.0B9NA03_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03770.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-53myb domain protein 3