PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G013800.2
Common NamePOPTR_0018s03110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 270aa    MW: 28497.3 Da    PI: 4.359
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G013800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.43.3e-09447441
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        + C+ +++  ++lfC+ ++ +lC +C +++H        H +v+
  Potri.018G013800.2  4 KLCDSCKSATATLFCRADSAFLCISCDSKIHAAnklasrHARVS 47
                        68*****************************6567777777665 PP
2zf-B_box30.19.6e-104791442
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +C+ +e+ ++++ C+ +   lC +C   +H+       H++vp+
  Potri.018G013800.2 47 SVCEVCEQAPAHFTCKADAAALCVTCDRDIHSAnplasrHERVPI 91
                        68*****************************66999999*99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011911.064148IPR000315B-box-type zinc finger
PfamPF006438.0E-7447IPR000315B-box-type zinc finger
CDDcd000214.43E-8548No hitNo description
PROSITE profilePS5011911.1634491IPR000315B-box-type zinc finger
PfamPF006434.3E-84791IPR000315B-box-type zinc finger
CDDcd000219.20E-94891No hitNo description
SMARTSM003361.6E-114991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCISCD SKIHAANKLA SRHARVSVCE VCEQAPAHFT  60
CKADAAALCV TCDRDIHSAN PLASRHERVP ITPFFDSSST VHGGGEAVNL LEDRYFDEVD  120
GGRGDVSREE AEAESWLLPN PGGGTTKGVD SMDLNTGQYV FGSEMDPYLD LDPYVDPKVE  180
VQEQNSSGTT DGVVPVQSNK LGFQSPALVN DHCCYELDFS TGSKSFGGGY GYNSLSQSVS  240
SSSLDVGVVP DGSGSTLTDI SNPYCSRSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.39760.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G013800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485090.0EF148509.1 Populus trichocarpa x Populus deltoides clone WS0131_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324936.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T97e-93COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLB9ILB00.0B9ILB0_POPTR; Co-like family protein
STRINGPOPTR_0018s03110.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-83CONSTANS-like 4