PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G019800.5
Common NamePOPTR_0018s02470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 207aa    MW: 23332.4 Da    PI: 9.6891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G019800.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.51.6e-19164202138
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 
                         ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv
  Potri.018G019800.5 164 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKV 202
                         58***************************99*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-18157202IPR003657WRKY domain
PROSITE profilePS5081117.913159206IPR003657WRKY domain
SuperFamilySSF1182902.88E-16162203IPR003657WRKY domain
SMARTSM007742.7E-10164206IPR003657WRKY domain
PfamPF031066.1E-15165202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MESSWVNTSL DLNINPFKHV NESTQVQKIK KFEGYSTRVL EQKLQVKNED GVGVLVEELT  60
RMSSENKKLT EMLGVVCDNY MALQKHLADL VSKNSVKEIS TPISSRKRKA ESEDYSIVIN  120
GISGGNAESS SIDEESSKRP KENLKSKISR TYFRTSESDA SLVVKDGYQW RKYGQKVTRD  180
NPSPRAYYKC SFAPSCPVKK KVITYN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.81980.0bud| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G019800.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371762.11e-147probable WRKY transcription factor 40
SwissprotQ9C5T44e-50WRK18_ARATH; WRKY transcription factor 18
TrEMBLU5FH191e-145U5FH19_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02470.11e-146(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-52WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Keates SE,Kostman TA,Anderson JD,Bailey BA
    Altered gene expression in three plant species in response to treatment with Nep1, a fungal protein that causes necrosis.
    Plant Physiol., 2003. 132(3): p. 1610-22
    [PMID:12857840]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Bülow L,Steffens NO,Galuschka C,Schindler M,Hehl R
    AthaMap: from in silico data to real transcription factor binding sites.
    In Silico Biol. (Gedrukt), 2006. 6(3): p. 243-52
    [PMID:16922688]
  4. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  7. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  8. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  9. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  10. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]