PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G022700.4
Common NamePOPTR_0018s02210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 415aa    MW: 46515.6 Da    PI: 6.3903
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G022700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.6e-083633962154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Potri.018G022700.4 363 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 396
                         469*****************************87 PP
2ELK28.82.7e-10317338122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Potri.018G022700.4 317 ELKHELKQGYKEKIVDIREEIL 338
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-19150194IPR005540KNOX1
PfamPF037902.7E-17152193IPR005540KNOX1
SMARTSM012563.7E-28205260IPR005541KNOX2
PfamPF037917.0E-20211259IPR005541KNOX2
PROSITE profilePS512139.969317337IPR005539ELK domain
SMARTSM011886.1E-4317338IPR005539ELK domain
PfamPF037899.6E-7317338IPR005539ELK domain
PROSITE profilePS5007111.726337400IPR001356Homeobox domain
SMARTSM003894.7E-11339404IPR001356Homeobox domain
SuperFamilySSF466895.13E-16339402IPR009057Homeodomain-like
CDDcd000868.33E-12340401No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25344401IPR009057Homeodomain-like
PfamPF059201.2E-17357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAYHHNLSSQ DLPLHHFTDQ QATENHTAPP NWLNTALLRS QQPPQQQTHH HFTDNNNTNN  60
FLNLHTAATT ATAATSDSNS HNPVQWLSRS SSSLLNRNHS DVIDDVAAGG DHAIITSISQ  120
ESSELKNMNK GEGEAMDSGG GESVVNWQNA RYKADILTHP LYDQLLSAHV ACLRIATPVD  180
QLPRIDAQLA QSQQVVTKYS ALGSHQGLVP DDKELDQFMT HYFLLLCSFK EQLQQHVRVH  240
AMEAVMACWE IEQSLQSLTG VSPGEGTGAT MSDDDEDQVD SDANLFVGSL EGADTLGFGP  300
LVPTESERSL MERVRQELKH ELKQGYKEKI VDIREEILRK RRAGKLPGDT TSVLKAWWQS  360
HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS NPSTSTVLKS KRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393413RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G022700.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700200.0KP770020.1 Populus tomentosa TALE transcription factor (Potri.006G259400) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446380.10.0homeobox protein knotted-1-like 3 isoform X3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2K1WUM80.0A0A2K1WUM8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02210.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-180KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]