PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G030000.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 560aa    MW: 61320.5 Da    PI: 7.1893
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G030000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.2e-15423461341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+CnCkk++Clk+YC+Cfaag +C+e+C C++C+N+ e
  Potri.018G030000.3 423 CKRCNCKKTRCLKRYCDCFAAGIYCAETCACQGCFNRPE 461
                         79**********************************876 PP
2TCR48.81.4e-15509547139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k gCnCk+s C+kkYCeC++a++ Cs+ C+Ce+CkN 
  Potri.018G030000.3 509 RHKTGCNCKRSMCVKKYCECYQANVGCSNACRCEGCKNI 547
                         5899**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.7E-15421462IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.202422549IPR005172CRC domain
PfamPF036383.9E-11424459IPR005172CRC domain
SMARTSM011142.8E-15509550IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.5E-11512546IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDSPKTTTTT TATTTISATT TESPFSNYVS RLSPIKPVKA SHVAQGLLGI NSPPLVFTSP  60
RTLSDRQTNF LRRFPCPQIS GAEISKNDGG SKKSADGPKD LRKSSTYLNS RLIINVQKSN  120
NINNFEQDQL GSFSGCVDEY LFDPVDVDCA DSVNLTKGDA SQAMPEQDGE DPKEHSTSET  180
IKEKIEEEGN IVEQPSHVCP NFMSDLLVDH TSRQQQCDTS GAQAAPPLED YGEDGGTVLH  240
GPVQLITHHG SEVSQLHRGM SRRCLQFEKA QQKTPMDGTY SLDLAITIIG SISSSSNTEL  300
EILDSSQVEL PSSSRKKQTV FVSMPSAGHK ISCSKLPSLV ERVSSTAGDD VLQTKASLAT  360
GSAISESLHT KETLNKLQPP EHQITLHNNK RFSSEHADNF EEFNQSSPKK KRKKVSSTDG  420
DGCKRCNCKK TRCLKRYCDC FAAGIYCAET CACQGCFNRP EYEDTVLEAR QQKESHNPLA  480
FAPKIVQHVT EFHAINVEDA SLFTPSSGRH KTGCNCKRSM CVKKYCECYQ ANVGCSNACR  540
CEGCKNIHGR KEGEKLHRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1642454712121Protein lin-54 homolog
5fd3_B2e-1642454712121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409413KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G030000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446106.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2K1WV340.0A0A2K1WV34_POPTR; Uncharacterized protein
STRINGPOPTR_0006s26740.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.14e-62Tesmin/TSO1-like CXC domain-containing protein