PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G038000.2

Common Name

POPTR_0018s00710g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 999aa MW: 109056 Da PI: 5.0175

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G038000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.9	7.3e-21	63	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l Potri.018G038000.2 63 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 109 79****************************.***********97 PP
2	Myb_DNA-binding	44.8	2.8e-14	115	157	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E+ l++a++ +G++ W+ + ++ gRt++ +k++w+ Potri.018G038000.2 115 KEAWTQQEEVALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 157 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-29	55	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	33.521	58	113	IPR017930	Myb domain
SuperFamily	SSF46689	1.57E-31	60	156	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-20	62	111	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-19	63	109	IPR001005	SANT/Myb domain
CDD	cd00167	1.81E-17	65	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-20	113	164	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.483	114	164	IPR017930	Myb domain
SMART	SM00717	1.8E-14	114	162	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-12	115	158	IPR001005	SANT/Myb domain
CDD	cd00167	5.35E-11	117	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MGLLATGSRD HPSFFTGGLV ALQGVPQRGN GKLKRMRFCA RLFSVSKERT GKKLKVLNPE 60 LVKGPWSKEE DEIIIELVNK YGPKKWSTIA QHLPGRIGKQ CRERWHNHLN PAINKEAWTQ 120 QEEVALIRAH QIYGNRWAEL TKFLPGRTDN AIKNHWNSSV KKKLDSYVAS GLLEQFQSSP 180 LAGHQTLSLP SSSSRLHSSG DDNAQRGGSE AEDISECSQE STMVGCSQSA GDQGIAVFHT 240 REEFQFAEES GPRKEQSSSP ASCSEQYYIP EMPCELGGSS NFLQQSFSHN TLTSANSDYQ 300 FELQELPNIS TLELRQESSG LPTHCITANE SHELVNDPFQ TSIGLGAPTS MGNIAASSAQ 360 SGQIFVSDDE CCRILFSEAA NCEIFSSGNI TKDSNVADLG GDMDSSLPQS PNIQISETER 420 STSQSFCPPR SAILGTSCRQ SFLPGSSLHS ADDNKPVYGR EPNPLMVQSF GTLEQQFISS 480 IHDSFIYTID AINSSCDNGT DNTELQEKPY LKEPSKLVPV NTFPSVSDTI SSCAADEKPN 540 VHAEQEAGGL CYEPPRFPSL DMPFLSCDLV QSGSDMQQEY SPLGIRQLMM SSMNCITPFR 600 LWDSPSRDGS PDAVLKSAAK TFTGTPSILK KRNRDLLSPL SDRRVDKKLE IDMASNLSKD 660 FSCLDVMFDE SETHNRSSLL PPSSNQEKNH ESSGEDKENL DPALEGAGEF CGNTKDNVKQ 720 GTGDSDARSK VHSDASVQQS SGVLSEENTN HLLFSPDQLG FKADRAFGPS ARTPRNLYRK 780 ILGTLSEQAS GSESSFGNPC MIFSPTSCKK NHENHIIEST SIQSIPSSAP SENMPDNSGN 840 NAGTGNFGIF GDTPFKRSIE SPSAWKSPWF INSFVPGPRI DTEISIEDIG YFMSPGDRSY 900 DAIALMKQLS EHTASAYADA LEVLGKDTPE SMLKERRHSN DQNGDQENRS HLASNVLTEC 960 RTLDFSECGT PGKLTENGKS SSAISFSSPS AYLLKGCR*

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MGLLATGSRD HPSFFTGGLV ALQGVPQRGN GKLKRMRFCA RLFSVSKERT GKKLKVLNPE  60
LVKGPWSKEE DEIIIELVNK YGPKKWSTIA QHLPGRIGKQ CRERWHNHLN PAINKEAWTQ  120
QEEVALIRAH QIYGNRWAEL TKFLPGRTDN AIKNHWNSSV KKKLDSYVAS GLLEQFQSSP  180
LAGHQTLSLP SSSSRLHSSG DDNAQRGGSE AEDISECSQE STMVGCSQSA GDQGIAVFHT  240
REEFQFAEES GPRKEQSSSP ASCSEQYYIP EMPCELGGSS NFLQQSFSHN TLTSANSDYQ  300
FELQELPNIS TLELRQESSG LPTHCITANE SHELVNDPFQ TSIGLGAPTS MGNIAASSAQ  360
SGQIFVSDDE CCRILFSEAA NCEIFSSGNI TKDSNVADLG GDMDSSLPQS PNIQISETER  420
STSQSFCPPR SAILGTSCRQ SFLPGSSLHS ADDNKPVYGR EPNPLMVQSF GTLEQQFISS  480
IHDSFIYTID AINSSCDNGT DNTELQEKPY LKEPSKLVPV NTFPSVSDTI SSCAADEKPN  540
VHAEQEAGGL CYEPPRFPSL DMPFLSCDLV QSGSDMQQEY SPLGIRQLMM SSMNCITPFR  600
LWDSPSRDGS PDAVLKSAAK TFTGTPSILK KRNRDLLSPL SDRRVDKKLE IDMASNLSKD  660
FSCLDVMFDE SETHNRSSLL PPSSNQEKNH ESSGEDKENL DPALEGAGEF CGNTKDNVKQ  720
GTGDSDARSK VHSDASVQQS SGVLSEENTN HLLFSPDQLG FKADRAFGPS ARTPRNLYRK  780
ILGTLSEQAS GSESSFGNPC MIFSPTSCKK NHENHIIEST SIQSIPSSAP SENMPDNSGN  840
NAGTGNFGIF GDTPFKRSIE SPSAWKSPWF INSFVPGPRI DTEISIEDIG YFMSPGDRSY  900
DAIALMKQLS EHTASAYADA LEVLGKDTPE SMLKERRHSN DQNGDQENRS HLASNVLTEC  960
RTLDFSECGT PGKLTENGKS SSAISFSSPS AYLLKGCR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	8e-54	55	164	50	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	8e-54	55	164	50	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G038000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324814.2	0.0	transcription factor MYB3R-1 isoform X1
TrEMBL	A0A3N7H8D3	0.0	A0A3N7H8D3_POPTR; Uncharacterized protein
STRING	POPTR_0018s00710.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	Homeodomain-like protein

Link Out ? help Back to Top
Phytozome	Potri.018G038000.2
Entrez Gene	7462940