PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G038100.1
Common NamePOPTR_0018s00700g, RAP2L15
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 156aa    MW: 17247.5 Da    PI: 7.9355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G038100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-211464256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +ykGVr +k +g+WvAeIr p++   r r++lg++ taeeAa+a++aa ++l+g+
  Potri.018G038100.1 14 RYKGVRMRK-WGKWVAEIRQPNS---RDRIWLGSYNTAEEAARAYDAAVLCLRGP 64
                        69*****99.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.3E-301472IPR001471AP2/ERF domain
PROSITE profilePS5103222.6031471IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-221473IPR016177DNA-binding domain
PfamPF008471.1E-141463IPR001471AP2/ERF domain
SMARTSM003801.9E-331477IPR001471AP2/ERF domain
CDDcd000182.85E-281471No hitNo description
PRINTSPR003675.8E-101526IPR001471AP2/ERF domain
PRINTSPR003675.8E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MVRERRERGD DSGRYKGVRM RKWGKWVAEI RQPNSRDRIW LGSYNTAEEA ARAYDAAVLC  60
LRGPSATFHF PTNIPEIPAM TDQVLSPMQI REVASRHARR GSTVEPAERI VGPGLCEVSS  120
GRSGEVYLGG GENMEECLEG IFSGAYCQTP GVWTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-17971972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G038100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559560.0EF155956.1 Populus trichocarpa RAP2-like protein (RAP2L15) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324813.21e-111ethylene-responsive transcription factor ERF016
SwissprotQ9C5919e-35ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A2K1WVJ51e-110A0A2K1WVJ5_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00700.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15296813
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.13e-28ERF family protein