PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G044900.3
Common NamePOPTR_0018s08090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 354aa    MW: 39478.6 Da    PI: 6.9846
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G044900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17242276135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Potri.018G044900.3 242 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 276
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-7916332IPR016679Transcription factor, GATA, plant
SMARTSM004013.7E-16236286IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.097236272IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15239300No hitNo description
Gene3DG3DSA:3.30.50.103.2E-14240274IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.74E-14241288No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15242276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAPEFYGAS GFFSSQFTSN EKHHSLDSNN KSIGGGDHFI VEDLLDFSNE DDDAMITDPN  60
NNNTIVTATT NSTDSSTVTI KETHQYANYG FCCYVQYDDL AELEWLSNFV EESFSSEDLQ  120
RLQLISGMKA RPDESSKSRH FRTHGDTDDN NNGDVSNISN INNTMFNPET AVPAKARSKR  180
SRAAPGNWAS RLLVLSPTTS SSDTEIIAGP TPHPNSGKKT IKVEARQKKR DGGVEGCDGR  240
KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFML TKHSNSHRKV  300
LELRRQKEMV RAQQQHQHQQ FLHHHQNMVF GVSNGGDDYL IHQHVGPDFR QMI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G044900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445864.10.0GATA transcription factor 12-like
SwissprotP697814e-87GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2K1WVS50.0A0A2K1WVS5_POPTR; GATA transcription factor
STRINGPOPTR_0018s08090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-78GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]