PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G048000.1

Common Name

POPTR_0018s08400g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 83aa MW: 9487.28 Da PI: 10.5272

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G048000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.1	4.9e-18	16	53	8	45
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rq +skR+ gilKKA+EL +LCd++ a+++fs+tgk Potri.018G048000.1 16 ARQAKYSKRKIGILKKAKELAILCDIDLALLMFSPTGK 53 69999********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-22	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.866	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-21	2	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-17	14	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-15	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-15	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MGRRRLKIQR LECVKARQAK YSKRKIGILK KAKELAILCD IDLALLMFSP TGKPTLYVGQ 60 DKDFGTVLDR MSALTFEERE ER*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G048000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012432.1	4e-40	PREDICTED: agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	2e-23	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	B9IKF0	1e-51	B9IKF0_POPTR; Uncharacterized protein
STRING	POPTR_0018s08400.1	2e-52	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20519	5	5
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26320.1	2e-19	AGAMOUS-like 33

Link Out ? help Back to Top
Phytozome	Potri.018G048000.1
Entrez Gene	7476682

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]