PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G052700.1
Common NamePOPTR_0018s05240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 186aa    MW: 20480.2 Da    PI: 8.3946
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G052700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.98.3e-3951041100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaC+++rr+C +dC+lap fp+e++k+f+++hklFG++n+++ lk++ +e++++ ++s+vyeA+ar+rdPv+G++g+i++l q+++ +k
  Potri.018G052700.1   5 ACAACRHQRRRCRPDCPLAPFFPHEKAKDFEAAHKLFGVHNIVNNLKKIIPEQKPESITSMVYEANARVRDPVSGCTGIISRLLQNINAVK 95 
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         +el+ ++++
  Potri.018G052700.1  96 VELEFVQAQ 104
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.8124105IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-375102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MKPPACAACR HQRRRCRPDC PLAPFFPHEK AKDFEAAHKL FGVHNIVNNL KKIIPEQKPE  60
SITSMVYEAN ARVRDPVSGC TGIISRLLQN INAVKVELEF VQAQVACFHT LQQQLGDQNV  120
VDNNPQQLQE SSFAQETKLF DGVHQGISLS IGQPAVKPER RSSSSPSSSK AHGKQPLQDV  180
SDDGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-24610512111LOB family transfactor Ramosa2.1
5ly0_B1e-24610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G052700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445368.11e-117protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A3N7HWH51e-116A0A3N7HWH5_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05240.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2826433
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-21LOB domain-containing protein 22