PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G058800.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 307aa    MW: 33642.8 Da    PI: 5.4116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G058800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-141463148
                        TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd  l+ + + + g   +W + +++ g++R++k+c++rw++yl
  Potri.018G058800.2 14 RGPWSPEEDATLKSYLETHRGTggNWIALPQKAGLKRCGKSCRLRWLNYL 63
                        89******************99**************************97 PP
2Myb_DNA-binding46.96.2e-1570112246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd ++  +  q+G++ W++Ia+ ++ gRt++++k++w++
  Potri.018G058800.2  70 GGFTEEEDNIICALYSQMGSR-WSLIASQLP-GRTDNDVKNYWNT 112
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.719963IPR017930Myb domain
SuperFamilySSF466891.15E-2511110IPR009057Homeodomain-like
SMARTSM007172.1E-91365IPR001005SANT/Myb domain
PfamPF002497.7E-131463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231570IPR009057Homeodomain-like
CDDcd001671.08E-61663No hitNo description
PROSITE profilePS5129424.1864118IPR017930Myb domain
SMARTSM007172.3E-1468116IPR001005SANT/Myb domain
PfamPF002497.1E-1370112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2471118IPR009057Homeodomain-like
CDDcd001672.98E-1172114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE THRGTGGNWI ALPQKAGLKR CGKSCRLRWL  60
NYLRPDIKHG GFTEEEDNII CALYSQMGSR WSLIASQLPG RTDNDVKNYW NTKLKRKILA  120
GKINISIRNK SIDAPTSIAN ILTSPVLYGP KAETESTITI SDYSLTQSSG TLPTLSDIGY  180
GPFINCTRQN LSADQFQFSN FPGVMDMSEF GATSMNSSHI VSPSQECSSI SDSSSLALDN  240
KGIPLPRNGG LEGAGMLMDS EFDLPSDFFN GLLFQDEASE AATNCYQYFA DFGYVDMKPQ  300
GLTNQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141187108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G058800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445863.10.0transcription factor MYB87
TrEMBLA0A2K1WWJ40.0A0A2K1WWJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s04710.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-73myb domain protein 84