PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G064700.1
Common NamePOPTR_0018s07220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 338aa    MW: 37361.8 Da    PI: 8.8662
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G064700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.22.1e-31181237158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++I++RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Potri.018G064700.1 181 DGPIYVNAKQYRGIIRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 237
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-35179240IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.869180240IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22183205IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.0E-27183237IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860185205IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-22214237IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALRIQNLLK KNFDEPYFTV SCPSWWNSNE QQFLPSLSKN TSFKVDSPNQ PYHESKQLGF  60
HLLDQESSST LSIGQSHNEM SSVGGINSQD QCIPSESDES CGKGVKGKMK PVLLLSTPDS  120
MSNHSQADCS YSMVRAPYAD PYFGGLCNPY ELHAFIQPHL GSHMVGMTAG RVPLPVDLAD  180
DGPIYVNAKQ YRGIIRRRQS RAKLEAQNKL VKNRKPYLHE SRHIHALNRV RGSGGRFLSK  240
KKLQESDPTP SQCNVTDTIH SHVKNDASEL ESYQSGTGQS GASNTTCSDI TSVSYSNVTF  300
RQPERRFSGI ATRLGGGMEI NSRLICRGTQ HHTSVVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18183242463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G064700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146300.0AC214630.1 Populus trichocarpa clone POP062-E04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324716.30.0nuclear transcription factor Y subunit A-3
TrEMBLA0A2K1WWT40.0A0A2K1WWT4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-52nuclear factor Y, subunit A3