PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G064700.2
Common NamePOPTR_0018s07220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 332aa    MW: 36793.2 Da    PI: 9.2912
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G064700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.22.1e-31175231158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++I++RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Potri.018G064700.2 175 DGPIYVNAKQYRGIIRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 231
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-35173234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.869174234IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-27177231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22177199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-22208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALRIQNLLK KNFDEPYFTV SCPSWWNSNE QQFLPSLSKN TSFKVDSPNQ PYHESKQLGF  60
HLLDQESSST LSIGQSHNEM SSVGGINSQD QYESCGKGVK GKMKPVLLLS TPDSMSNHSQ  120
ADCSYSMVRA PYADPYFGGL CNPYELHAFI QPHLGSHMVG MTAGRVPLPV DLADDGPIYV  180
NAKQYRGIIR RRQSRAKLEA QNKLVKNRKP YLHESRHIHA LNRVRGSGGR FLSKKKLQES  240
DPTPSQCNVT DTIHSHVKND ASELESYQSG TGQSGASNTT CSDITSVSYS NVTFRQPERR  300
FSGIATRLGG GMEINSRLIC RGTQHHTSVV Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18177236463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G064700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146300.0AC214630.1 Populus trichocarpa clone POP062-E04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324716.30.0nuclear transcription factor Y subunit A-3
TrEMBLA0A2K1WWU90.0A0A2K1WWU9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07220.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-51nuclear factor Y, subunit A3