PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G064700.3
Common NamePOPTR_0018s07220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 230aa    MW: 25338.6 Da    PI: 9.8477
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G064700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.11.1e-3173129158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++I++RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Potri.018G064700.3  73 DGPIYVNAKQYRGIIRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 129
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-3571132IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.86972132IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.8E-237597IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-2775129IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607797IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.8E-23106129IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKPVLLLSTP DSMSNHSQAD CSYSMVRAPY ADPYFGGLCN PYELHAFIQP HLGSHMVGMT  60
AGRVPLPVDL ADDGPIYVNA KQYRGIIRRR QSRAKLEAQN KLVKNRKPYL HESRHIHALN  120
RVRGSGGRFL SKKKLQESDP TPSQCNVTDT IHSHVKNDAS ELESYQSGTG QSGASNTTCS  180
DITSVSYSNV TFRQPERRFS GIATRLGGGM EINSRLICRG TQHHTSVVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2073134263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G064700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146300.0AC214630.1 Populus trichocarpa clone POP062-E04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324716.31e-171nuclear transcription factor Y subunit A-3
TrEMBLA0A2K1WWU91e-170A0A2K1WWU9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07220.11e-169(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-50nuclear factor Y, subunit A3