PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G083000.2
Common NamePOPTR_0018s08960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 546aa    MW: 59901.5 Da    PI: 7.7551
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G083000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.9e-14132171242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++++CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  Potri.018G083000.2 132 KQRQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 171
                         789*************************.********9875 PP
2TCR512.8e-16216255140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Potri.018G083000.2 216 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 255
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-15131171IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.442132256IPR005172CRC domain
PfamPF036387.3E-11134168IPR005172CRC domain
SMARTSM011148.4E-20216257IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MGESEGSEFP PKKQQQQSEN AYFQTKKLAR QLDFTQGVLP DHPQSQPSPL QKPPLLVSPA  60
AAQSQPQPHP QSQLQLQPQV AEIQVVPQQQ TQQQQQPARA VLRLLPPMFR KPESPKSIPI  120
PNTELKDGTP KKQRQCNCKH SRCLKLYCEC FASGTYCDGC NCVNCYNNVE NEAARREAVE  180
ATLERNPNAF RPKIASSPHG TRDSREETGD GLVFVKHNKG CHCKKSGCLK KYCECFQANI  240
LCSENCKCMD CKNFEGSEER QALFHGDHGN NMAYIQQAAN AAITGAIGSS GYASPPVSRK  300
RKGQELFFGH TVKDQSFDRL GHFQQVNGSH TRPPAPSSSL PSNPIARAGN AITLGPSKIT  360
YRSLLADIIQ PQDLKELCSV LVVLSGEAAK TFSDQRNSME KRVEDQRETL LASSTQERLQ  420
SHKESDADKI VANDCSSANH ADKVGPDDSS SDGADMPKGR PMSPGTLELM CDEQDTMLMA  480
AASPSGLMGH GCNTSSQLPC GQGMAEAHAE QERIVLTKFR DCLNRLITFG EIKGKFLFPF  540
SNFLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-321242652132Protein lin-54 homolog
5fd3_B3e-321242652132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G083000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166730.0AC216673.1 Populus trichocarpa clone POP019-C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446433.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_024446434.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1WXT60.0A0A2K1WXT6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16340.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-180Tesmin/TSO1-like CXC domain-containing protein