PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G083700.4
Common NamePOPTR_0018s09060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 248aa    MW: 26437.4 Da    PI: 6.8895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G083700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000281131511255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Potri.018G083700.4 113 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 151
                         6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.585101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-6111155No hitNo description
SuperFamilySSF474592.88E-10111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-7115157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MENWEEQVLH QASSASVMDV KQENSASNYV YGANEDFQAA AKPTACSQVI PASSPKSCVT  60
SFSSNMLDFS TSKGDGRHPP PDRSSDCNST ANGGAVKKAR VQSSSAQPTF KVRKEKLGDR  120
ITALHQLVSP FGKTDTASVL LEAIGYIRFL QSQIEALSLP YLGSGSTNMR QQQSVQGESN  180
CIFPEDPGQL LNDSCIKRKG ASQQDSHGEP KDLRSRGLCL VPVSCTLQVG SDNGADYWAP  240
ALGGGFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.47110.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G083700.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1463810.0EF146381.1 Populus trichocarpa clone WS0117_M02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325008.20.0transcription factor bHLH68
SwissprotQ8S3D13e-91BH068_ARATH; Transcription factor bHLH68
TrEMBLB9ILQ20.0B9ILQ2_POPTR; BHLH family protein
STRINGPOPTR_0018s09060.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]