PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G094300.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 169aa MW: 18643.6 Da PI: 8.5045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G094300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Potri.018G094300.1 43 FSCNYCRRKFYSSQALGGHQNAH 65 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	40	70	No hit	No description
PROSITE profile	PS50157	11.053	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MDFQPNTSLH LSLPSNQLNL ELVLEPSSSS SSSPHSPAEP RIFSCNYCRR KFYSSQALGG 60 HQNAHKLERT LAKKSREMSS SVRAHGRSNP RSGSSSCMSG PSFPRHHEPA LARFEHHGHA 120 GRFVGDASYD RTEMNYGSIE GVGGSWSLVY RTENVQEELS QLDLSLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G094300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024446546.1	1e-120	zinc finger protein 7
TrEMBL	A0A2K1WYG7	1e-119	A0A2K1WYG7_POPTR; Uncharacterized protein
STRING	POPTR_0006s18540.1	3e-71	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9619	23	34
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	4e-32	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Potri.018G094300.1