PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G109500.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 284aa    MW: 30386.6 Da    PI: 6.7954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G109500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.6e-07252281537
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK 37 
                         h+++Er RR+ri +++  L+el+P+a   ++ K
  Potri.018G109500.3 252 HSIAERLRRERIAERMKALQELVPNA---NKVK 281
                         99***********************8...5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-7245281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-5245282No hitNo description
PROSITE profilePS5088811.547247283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-6251281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-4252280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQPCSREMQG INSLLNPSSQ IPLQDLQNQQ NPSQIQNSHF DPNSSSNDDF LEQMLSNIPP  60
CSWPDLKSPW DLTMPINNND SSNSIAKPRD LSDETAPSNT DNSNLGFHNN FDESVILASK  120
LRQHQISGGG GAAAAAKMML QQQLLMAAAR GVLPQNDVID GSSFKGGDGS MQGLFNGFGA  180
GSMNGTGQAS NQSMQHFNHP QGGAMQAQNF GAQGAATTAV MNQPQASGSN GGAPAQPRQR  240
VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKV KQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.157180.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G109500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479390.0EF147939.1 Populus trichocarpa clone WS0126_B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325140.20.0transcription factor bHLH66
TrEMBLA9PHT30.0A9PHT3_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11800.10.0(Populus trichocarpa)
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]