PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G124500.1
Common NamePOPTR_0025s00720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 183aa    MW: 21084 Da    PI: 9.3082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G124500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79.1e-1827110997
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         d   ++  ++p+kf++++g++   sk  tled++g  W+++l  +  +g++ ++kGW++F++   Lk gD +vF+++g+s+f   v+++
  Potri.018G124500.1  27 DDIPENKPWIPRKFLRKIGNV--LSKSATLEDPNGTLWRIEL-LKSADGMVRFQKGWQDFADFYSLKKGDLLVFEYKGNSRF--SVSIY 110
                         555566789*********988..8999***************.5666677****************************9999..77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2315111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2119112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.39519113IPR003340B3 DNA binding domain
CDDcd100177.00E-1820111No hitNo description
SMARTSM010199.1E-1121113IPR003340B3 DNA binding domain
PfamPF023621.5E-1526110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGFSRERERD GSLFKPGEYR FIKRIHDDIP ENKPWIPRKF LRKIGNVLSK SATLEDPNGT  60
LWRIELLKSA DGMVRFQKGW QDFADFYSLK KGDLLVFEYK GNSRFSVSIY KEMDCPAGSI  120
DSVSSNQFGH FEEDMEDEDY LEFLAKLPKQ KPEVSYSFSK PASDSPSCMI IKSGRSRKRL  180
KS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G124500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389440.21e-131B3 domain-containing transcription factor VRN1
TrEMBLA0A2K1WZX81e-130A0A2K1WZX8_POPTR; Uncharacterized protein
STRINGPOPTR_0025s00720.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein