PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G127700.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 169aa    MW: 19210.2 Da    PI: 4.8469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G127700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-0924482348
                        -HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                        +W++Ia +++ gRt++++k++w+++l
  Potri.018G127700.2 24 RWSLIAGRLP-GRTDNEVKNYWNTHL 48
                        6*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.11E-82354IPR009057Homeodomain-like
PfamPF002492.1E-72448IPR001005SANT/Myb domain
CDDcd001675.29E-72448No hitNo description
PROSITE profilePS500906.692448IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.5E-132449IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MPIRRSMLYN NLSGFHFIFI VTCRWSLIAG RLPGRTDNEV KNYWNTHLNK RLPSGKRKST  60
DSNPDQDDNN TKENKSKRLR ALGDSQPTGN TSPIGSTEEL EGKNQEKEER SAVSDVWAQQ  120
DAQSMMNYYI ESPMVPDNNA TFVFDDEPFL AYWDSFVLFE SVGCGGDW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G127700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325206.11e-104transcription factor MYB82
TrEMBLB9IMW01e-103B9IMW0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12780.11e-103(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-14myb domain protein 82