PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G129800.2

Common Name

POPTR_0018s12990g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 183aa MW: 20732.5 Da PI: 8.3049

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G129800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	204.5	4.1e-63	9	161	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ ++h++ +++ ++ + + + + +++ st + Potri.018G129800.2 9 PHEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDHVQ--ASNHISHDYRIDMGS---SSKFNNKISTRT 94 579***************************************************944..445565555544322...222223333333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ + v++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+i fgl Potri.018G129800.2 95 PAT-------NIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIQFGL 161 332.......2333334579**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.6E-70	9	161	IPR006780	YABBY protein
SuperFamily	SSF47095	8.77E-8	105	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSSCVDVVPH EQLCYIPCNF CNIVLAVSVP CSNLFDIVTV RCGHCTNLWS VNMAAAFQSL 60 SWQDHVQASN HISHDYRIDM GSSSKFNNKI STRTPATNIV TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPEISH REAFSTAAKN WAHFPHIQFG LMLETNNQAK LDDTTFKKFH 180 AL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.7386	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G129800.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667743	1e-62	KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds.
GenBank	KJ667745	1e-62	KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
GenBank	KJ667747	1e-62	KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324648.2	1e-129	axial regulator YABBY 5
Swissprot	Q8GW46	2e-85	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9IMX9	1e-127	B9IMX9_POPTR; Uncharacterized protein
STRING	POPTR_0018s12990.1	1e-128	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-87	YABBY family protein

Link Out ? help Back to Top
Phytozome	Potri.018G129800.2
Entrez Gene	7470091

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]