PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G129800.6

Common Name

POPTR_0018s12990g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 169aa MW: 19114.5 Da PI: 9.703

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G129800.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	173.6	1.2e-53	6	141	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 +vsvP + lf +vtvrCGhCt+l svn+a a q l+ ++h++ +++ ++ + + + + +++ st ++++ + v++ Potri.018G129800.6 6 IVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDHVQ--ASNHISHDYRIDMGS---SSKFNNKISTRTPAT-------NIVTQER 84 69***********************************944..445565555544322...222223333333332.......2333334 PP YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+i fgl Potri.018G129800.6 85 VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIQFGL 141 579**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.8E-58	6	141	IPR006780	YABBY protein
SuperFamily	SSF47095	7.46E-8	85	135	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	89	135	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MQKNPIVSVP CSNLFDIVTV RCGHCTNLWS VNMAAAFQSL SWQDHVQASN HISHDYRIDM 60 GSSSKFNNKI STRTPATNIV TQERVVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPEISH 120 REAFSTAAKN WAHFPHIQFG LMLETNNQAK LDDGSDKHLM SRSALLNN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.7386	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G129800.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667743	1e-62	KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds.
GenBank	KJ667745	1e-62	KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
GenBank	KJ667747	1e-62	KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324648.2	1e-119	axial regulator YABBY 5
Swissprot	Q8GW46	8e-72	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9IMX9	1e-117	B9IMX9_POPTR; Uncharacterized protein
STRING	POPTR_0018s12990.1	1e-118	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	Potri.018G129800.6
Entrez Gene	7470091

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]