PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G140700.1
Common NamePOPTR_0018s13750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 405aa    MW: 45653.3 Da    PI: 4.7946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G140700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-1619106297
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k + ps+v+   +l l kkf++eh    +e++ ++led +g+s + k+    ++++  l++GW++F  +++L egD++vF+l++ ++f  
  Potri.018G140700.1  19 IKYMQPSHVSGGFWLGLCKKFCDEHLP--NEDTVIVLEDGNGKSSQTKY--LAHKSG--LSGGWRGFSIDHNLVEGDVLVFHLVKPTKF-- 101
                         578999*******************63..36779***************..555555..9**********************9987777.. PP

                         EEEEE CS
                  B3  93 vvkvf 97 
                         +v v+
  Potri.018G140700.1 102 KVYVV 106
                         66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-2110109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2311109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-2416107No hitNo description
PROSITE profilePS5086311.1118109IPR003340B3 DNA binding domain
SMARTSM010192.9E-1918109IPR003340B3 DNA binding domain
PfamPF023622.2E-1419105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MIRAIEIQAS ISSEFPSLIK YMQPSHVSGG FWLGLCKKFC DEHLPNEDTV IVLEDGNGKS  60
SQTKYLAHKS GLSGGWRGFS IDHNLVEGDV LVFHLVKPTK FKVYVVKANS AEEVDGALAI  120
LKFDSCIKQM NPCKSFLYSE DLCSLVKLQM AQIIKNIITS LLTVIVTDHA EAEMEYQDLE  180
HLYPTNPEDN NTMPGISNIR LISDHSENES GDFGFEITDG IRMSETVVDF KEVRSFEDFD  240
ILVNGLVINC ELSKHLQMKY YELCCSQKCF LHENFIEGLN CKLIAGIISE TINIADAIRA  300
SKVTTSYDNF TTWEKTLKAF LGLGMKVDFL LARLEQLINL SAKSERHKKA RLEKDNAEDE  360
MRILEAKISG VEETMNRLDV VVETLEVNAE NLELRFQELT KAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G140700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445899.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A3N7G7P00.0A0A3N7G7P0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-39B3 family protein