PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G141600.1
Common NamePOPTR_0018s13840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 217aa    MW: 24906.2 Da    PI: 4.9492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G141600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.4e-145599655
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           Er+RR+++N+++  Lre +P  +      Kl+Ka+i + A++YI++Lq
  Potri.018G141600.1 55 TVSERNRRKKLNDKLYALREAVPRiS------KLDKASIIKDAIDYIQDLQ 99
                        568*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1014998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-1352102No hitNo description
SuperFamilySSF474591.15E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-115599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1855117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MESFQNISEY QNYWEMPSMF WNDELTSWEM DQASSQIYDS SSPDGAASAS ASRNTVSERN  60
RRKKLNDKLY ALREAVPRIS KLDKASIIKD AIDYIQDLQE QETRLQAEIM ELESERSEKD  120
KGYEFESELP VLLTSKKTRY DHISDHREPR SDPIEVHQLR VSSMGEKTLF VSLTCSKARE  180
AMVRICEVFE SLKLKIITAS VTTVSGMVKK TVLIEM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15261RNTVSERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G141600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445130.0EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372183.11e-159transcription factor bHLH35 isoform X2
SwissprotQ2HIV98e-64BH035_ARATH; Transcription factor bHLH35
TrEMBLU5FGC41e-157U5FGC4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13830.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.35e-57bHLH family protein